Name: seqloc-datafiles Version: 0.2.2 Cabal-Version: >= 1.4 Synopsis: Read and write BED and GTF format genome annotations Description: Read and write BED and GTF format genome annotations License: MIT License-File: LICENSE Author: Nick Ingolia Maintainer: nick@ingolia.org Build-Type: Simple Category: Bioinformatics Flag Tests Description: Build test program Default: False Library Exposed-modules: Bio.SeqLoc.Bed, Bio.SeqLoc.GTF, Bio.SeqLoc.TranscriptTable Other-modules: Bio.SeqLoc.ZeptoUtils Build-depends: base >= 4.2 && < 5, bytestring, attoparsec >= 0.8.5, hashable, unordered-containers, iteratee >= 0.8.1, seqloc >= 0.3.1, biocore >= 0.2 Hs-Source-Dirs: src Ghc-options: -Wall Executable gtf-to-bed Main-is: GtfToBed.hs Other-modules: Bio.SeqLoc.GTF, Bio.SeqLoc.Bed, Bio.SeqLoc.ZeptoUtils Build-depends: base >= 4.2 && < 5, bytestring, attoparsec >= 0.8.5, hashable, unordered-containers, iteratee >= 0.8.1, seqloc >= 0.3.1, biocore >= 0.2, transformers, monads-tf Hs-Source-Dirs: src Ghc-options: -Wall -rtsopts C-Sources: src/rtsopts.c Executable test-gtf if !flag(Tests) Buildable: False Main-is: TestGtf.hs Other-modules: Bio.SeqLoc.GTF, Bio.SeqLoc.TranscriptTable, Bio.SeqLoc.ZeptoUtils Build-depends: base >= 4.2 && < 5, bytestring, attoparsec >= 0.8.5, hashable, unordered-containers, iteratee >= 0.8.1, seqloc >= 0.3.1, biocore >= 0.2, QuickCheck, random Hs-Source-Dirs: src, test Ghc-options: -Wall -rtsopts C-Sources: src/rtsopts.c Executable test-bed if !flag(Tests) Buildable: False Main-is: TestBed.hs Other-modules: Bio.SeqLoc.Bed, Bio.SeqLoc.TranscriptTable, Bio.SeqLoc.ZeptoUtils Build-depends: base >= 4.2 && < 5, bytestring, attoparsec >= 0.8.5, hashable, unordered-containers, iteratee >= 0.8.1, seqloc >= 0.3.1, biocore >= 0.2, QuickCheck, random Hs-Source-Dirs: src, test Ghc-options: -Wall Executable gtf-introns if !flag(Tests) Buildable: False Main-is: GtfIntrons.hs Other-modules: Bio.SeqLoc.GTF, Bio.SeqLoc.TranscriptTable, Bio.SeqLoc.ZeptoUtils Build-depends: base >= 4.2 && < 5, bytestring, attoparsec >= 0.8.5, hashable, unordered-containers, iteratee >= 0.8.1, seqloc >= 0.3.1, biocore >= 0.2, QuickCheck, random Hs-Source-Dirs: src, test Ghc-options: -Wall -rtsopts C-Sources: src/rtsopts.c