Name: a50 Version: 0.5.1 License: GPL Author: Ketil Malde Maintainer: Ketil Malde Category: Bioinformatics Synopsis: Compare genome assemblies Description: a50 - a simple tool for graphing genome coverage and fragmentation. . Reads files of contigs, and compares them by plotting each as a line in a graph. The x-axis represents contig number, the y-axis represents total (cumulative) size. An ideal assembly contains a few, large contigs, thus this curve should rise steeply, and stop early (but at the expected genome size). Conversely, a poor assembly consisting of many small fragments will have a less steep curve extending far to the right. . The graphs produced by a50 gives a simple and easy to grasp comparison between assemblies, and yet produces a more detailed and informative view than the usual metrics like largest contig size or N50. . The Darcs repository is at . HomePage: http://blog.malde.org/index.php/a50-a-graphical-comparison-of-genome-assemblies Build-Type: Simple Cabal-Version: >= 1.2.3 Tested-with: GHC==6.12.1 Data-files: README Executable a50 Main-Is: A50.hs Other-Modules: Gnuplot, Options, Blat, Sort Hs-Source-Dirs: src Ghc-Options: -Wall Build-Depends: base>=3 && <5, biopsl, biofasta, process, containers, cmdargs >= 0.5, directory