Name: deltasnp Version: 0.1 License: GPL Cabal-Version: >= 1.6 Build-Type: Simple Category: Bioinformatics Author: Ketil Malde Maintainer: Ketil Malde Synopsis: Process mpileup output to identify significant differences Description: Using Agresti-Coull estimation of confidence interval, report variant positions found in pooled samples along with significance of the variant having different underlying allele frequency ('+' for 95%, '*' for 99%). -- Using IO arrays (baseline) Executable deltasnp Hs-Source-Dirs: src Main-Is: Main.hs Other-Modules: AgrestiCoull, MPileup, RandomSelect, Variants Build-Depends: base >= 4 && < 5, random, mtl, MonadRandom Ghc-Options: -rtsopts -Wall