URLHOME = http://www.ii.uib.no/~ketil/bioinformatics DATA = $(URLHOME)/downloads/data VERSION = 0.7 RBR = ../rbr -k 15 -s 1.5 -t 6.0 WGET = wget -U RBR/test-$(VERSION) RESULTS = results # tests - download necessary files over the 'net # Retrieving files with 'wget' # Keep downloaded files .SECONDARY: b10k.seq b1k.seq %.seq: $(WGET) $(DATA)/$@.gz -O- | gunzip -c > $@ %-$(VERSION).md5: $(WGET) $(DATA)/$@ # Running RBR %.n: %.seq time $(RBR) -v -n $< -o $@ %.ng: %.seq time $(RBR) -v -n -g 30 $< -o $@ %.l: %.seq time $(RBR) -v -L $< -o $@ %.lg: %.seq time $(RBR) -v -L -g 30 $< -o $@ %.cov: %.seq time $(RBR) -v -D $< -o $@ %.kl: %.seq time $(RBR) -k 18 -v -L $< -o $@ %.in: %.seq time $(RBR) -v -L < $< -o $@ # Sparse tests (coverage, masking, and long keys) %.csp: %.seq time $(RBR) -v -L -D --sparse=1 $< -o $@ %.msp: %.seq time $(RBR) -v -L --sparse=1 $< -o $@ %.lsp: %.seq time $(RBR) -k 18 -v -L --sparse=1 $< -o $@ # Calculating checksums %.md5: % md5sum $* > $@ # Running tests test_%: b1k.%-$(VERSION).md5 b1k.%.md5 @cmp b1k.$*-$(VERSION).md5 b1k.$*.md5 && echo $@ ' ' Passed >> $(RESULTS) || echo $@ ' ' FAILED >> $(RESULTS) .PHONY: start start: @echo -n > $(RESULTS) .PHONY: print print: @cat $(RESULTS) .PHONY: test test: start test_l test_lg test_n test_ng test_cov test_kl test_in test_csp test_msp test_lsp print bigtest_%: b10k.%-$(VERSION).md5 b10k.%.md5 @cmp b10k.$*-$(VERSION).md5 b10k.$*.md5 && echo $@ ' ' Passed >> $(RESULTS) || echo $@ ' ' FAILED >> $(RESULTS) .PHONY: bigtest bigtest: start bigtest_l bigtest_lg bigtest_n bigtest_ng bigtest_cov bigtest_kl print