Name: varan Version: 0.5.2 License: GPL Cabal-Version: >= 1.6 Build-Type: Simple Category: Bioinformatics Author: Ketil Malde Maintainer: Ketil Malde Synopsis: Process mpileup output to identify significant differences Description: Post-processing output from `samtools mpileup` to extract various information, including statistics (per-position or global), consensus sequence (in various formats), and textual visualizations. Executable varan Hs-Source-Dirs: src Main-Is: Varan.hs Other-Modules: AgrestiCoull, MPileup, RandomSelect, Variants, Metrics, Options, ParMap, Process, Count, ESIV Build-Depends: base >= 4 && < 5, random, mtl, parallel, statistics, cmdargs, bytestring Ghc-Options: -rtsopts -Wall -threaded Executable vextr Hs-Source-Dirs: src Main-Is: VExtr.hs Other-Modules: MPileup, Count Build-Depends: base >= 4 && < 5, bytestring, cmdargs Ghc-Options: -rtsopts -Wall -threaded -main-is VExtr Executable sparks Hs-Source-Dirs: src Main-Is: Sparks.hs Other-Modules: MPileup, Count Build-Depends: base >= 4 && < 5, bytestring, cmdargs, ansi-terminal Ghc-Options: -rtsopts -Wall -threaded