Name: xsact Version: 1.7.1 License: GPL License-File: LICENSE Author: Ketil Malde Maintainer: Ketil Malde Category: Bioinformatics Synopsis: Cluster EST sequences Description: Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries: . * xsact; implements a complete multiple-matching clustering algorithm. * xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters. * xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words. Homepage: http://malde.org/~ketil/ Cabal-Version: >= 1.2 Build-Type: Simple Tested-With: GHC==6.8.2 Executable xsact Main-Is: Xsact.lhs Hs-Source-Dirs: . Build-Depends: base, containers, random, array, unix, directory, process Ghc-Options: -Wall -O2 -funbox-strict-fields Executable xplit Main-Is: Xplit.lhs Hs-Source-Dirs: . Ghc-Options: -Wall -O2 -funbox-strict-fields Build-Depends: base Executable xtract Main-Is: Xtract.lhs Hs-Source-Dirs: . Ghc-Options: -Wall -O2 -funbox-strict-fields Build-Depends: base, random, array, containers