pristine:5b9f1a909ebd5ee90d83d0e90c936f02f7f5b79dfb74157d946837334a4b1454 Starting with inventory: 0000001632-a737a0fcfc6db80f983cd5537d04a75ce2a24f04fd0120037a2f48f371aa9aba [TAG v0 Ketil Malde **20120925084625 Ignore-this: 7c13a57b1a91aea743cb0512bea9813d ] hash: 0000001083-3eb1733782345df0ba61584d24daf864ec92d3402449492f8b93338206975013 [Bump version, add structural variants (indels) Ketil Malde **20120925093715 Ignore-this: 2961b37ef023c2178f1e2621475668b7 ] hash: 0000004782-6953022ef65a9e410ebe9e0c8df4efc8c71f174b676aebb4e5cc3741b7cd46c2 [output vector difference Ketil Malde **20130408134227 Ignore-this: 971efb0cd1a1d0349f576fb49e38bd64 ] hash: 0000000748-4213cac1176684351c583758d5603aa196d1ffc854fd0385b3915d446e58387e [Add Fst, possibly even correctly implemented Ketil Malde **20130411112320 Ignore-this: 9972db776a0733fc09edca2cff76569a ] hash: 0000000749-b8afe837aa9f0e834636e2facd5c8d44bfb0fe0f79848607a5e82e0e7278e899 [Use (normalized) angle instead of dist. Ketil Malde **20130412083423 Ignore-this: c2bc9baf102a8fed779deca258bc8d8 ] hash: 0000001158-e3636e310388281b686cb82620ecbe82eaec0f21e65ee11d72200c245a045bf4 [Factoring and output 0 fst if no hetero. Ketil Malde **20130422162930 Ignore-this: fbbc590091a0800b951915b6fa30420f ] hash: 0000000716-099c71c8a0b2e3a638bb35d30af7773d325f9ff2618ff388dbd04d4866b5092e [Fix warnings, limit exports. Ketil Malde **20130422163409 Ignore-this: f34c7402017c33c374055affcc780d8a ] hash: 0000000290-235e33ce36189ff82776dbec7c6c03ab7c09ffd4636a4920052f2c1b767ad379 [Output pi (avg no diffs from sequences) Ketil Malde **20130422163456 Ignore-this: 66c2a90043b9094bf70581b192b3b319 ] hash: 0000000530-0f98772a99d68c433d575783efba7ed32399509f073a340b0dbb3a3d78c34bcf [move counts def and helpers to Variants Ketil Malde **20130610073210 Ignore-this: c7d35a26970df372337e0d98487f0088 ] hash: 0000000822-25138fb069f97e0bdfad6f68fe2390633c8d0d21b976527600a97a5420f72617 [Add RandomSelect and fix other-modules field Ketil Malde **20130610073442 Ignore-this: d5cdedbe4c7eedceddbd9805142f7df8 ] hash: 0000002332-f250eaf25a32f0feaf55ff4512cf5d744b680e48a9ffadbe926a30c8d1a53bf5 [Add pval-functions and return Counts (not lists) Ketil Malde **20130611143715 Ignore-this: e4939def072b07e06607201f887129a ] hash: 0000000980-b583436c5ebcfdf5c6188999abfc052f6639d473f23f322db75a06a1ac33a514 [Output pvals as well. Ketil Malde **20130611143725 Ignore-this: d21b22dbf8d59982d90c08d291d10f2d ] hash: 0000001829-59b87c3a65d88eda1153b59eeddd381f326fc21402aa2a2b8cfadac76f51227d [only calculate pvalues if non-zero (or NaN) metric Ketil Malde **20130712130049 Ignore-this: 1a9c35c5de6d9e37138401991435ca8 ..but this changes p-values to 1 for pi_k. I think that's in fact correct, but must check this. ] hash: 0000000437-ca7afc796b2a84f78da1b78ad2f00c5e75096fea370bf96769d50a9f493a67fe [Add type sig for print_pval Ketil Malde **20130716135131 Ignore-this: bf13a2a433608316952bcbb68c5c200f ] hash: 0000000190-bc73400d0fd1b399a0ef2f2edd46c7e758349b388580aea7a8a0eb41766945d4 [Limit random sampling by distribution confidence interval (recycling A-C) Ketil Malde **20130716150902 Ignore-this: 4161e0eabbd7fbc3653caaadf965a5ba ] hash: 0000001120-098bd3fd36184a680a16e0876b58c758a442914a8056249b90f7e3f8accf4265 [new randomselect, use same dist Ketil Malde **20130717190249 Ignore-this: bd632c3533abdce52916e81997f386ab ] hash: 0000005355-b68c62ad52b29c50ac737841a9b741b66b21346f53b3173671afd9d4a952f548