# Rename this file to CONFIG, and edit its contents. # Will be included by the makefile in qualeval/qualeval.mk # Uses makefile syntax, so you can use $(wildcard) and $(patsubst) # and similar string-manipulating functions. # Number of threads to use for multi-threaded sub-processes (Note that # you can use -j to make asmeval run multiple sub-processes # simultaneously) THREADS := 1 # Add the name of the file containing the genome sequence here GENOME := xxx.fasta # The estimated genome size (used for calculating N50 etc) GENOMESIZE := 6e8 # import SFF and Illumina data (fastq format). # SFFs should end in .sff, Illumina should end in {1,2}.txt SFFS := FASTQPE := FASTQMP := RNASEQ := # EST-data or full-lenght transcripts. Will be mapped with BLAT. ESTS := # BAC ends or similar, also mapped with BLAT. BACS := # Mitochondrion sequence, or contigous regions of the genome. MITOCH := # Proteomes from related species, or other peptide sequences. PROT := # End of configuration.