Name: stmcluster Version: 0 License: GPL Cabal-Version: >= 1.6 Build-Type: Simple Category: Bioinformatics Author: Ketil Malde Maintainer: Ketil Malde Synopsis: Scaffolding contigs by finding links from BAM alignments -- Using IO arrays (baseline) Executable mainarray Hs-Source-Dirs: . Main-Is: MainArray.hs Build-Depends: base >= 4 && < 5, samtools > 0.2.0.1, stm, array, containers, time, bamstats, bytestring Ghc-Options: -rtsopts -- Single threaded STM Executable mainstm Hs-Source-Dirs: . Main-Is: MainSTM.hs Build-Depends: base >= 4 && < 5, samtools > 0.2.0.1, stm, array, containers, time, bamstats, bytestring Ghc-Options: -rtsopts -- The threaded STM, takes number of threads as first parameter Executable mainstmt Hs-Source-Dirs: . Main-Is: MainSTMt.hs Build-Depends: base >= 4 && < 5, samtools > 0.2.0.1, stm, array, containers, time, bamstats, bytestring Ghc-Options: -threaded -rtsopts