This directory contains source code for two executables and a script:

  fasta2fastq.hs - converts a FASTA-formatted file to FASTQ, faking quality
    data.
  snplist.hs - identifies substitutions between to FASTA-formatted files, and
    outputs them one on each line. (Warning: indels will mess this up)
  pipeline.sh - shell script implementing a sample pipeline for population
    genetics

You should be able to compile the executables by installing the GHC Haskell
compiler, along with the biocore, biofasta, and biofastq libraries.

Email me (ketil {a} malde . org) with any questions.